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GNPS Dashboard: collaborative exploration of mass spectrometry data in the web browser

https://doi.org/10.1038/s41592-021-01339-5

Petras, Daniel; Phelan, Vanessa V.; Acharya, Deepa; Allen, Andrew E.; Aron, Allegra T.; Bandeira, Nuno; Bowen, Benjamin P.; Belle-Oudry, Deirdre; Boecker, Simon; Cummings, Dale A.; et al (December 2021, Nature Methods)

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microbeMASST: a taxonomically informed mass spectrometry search tool for microbial metabolomics data

https://doi.org/10.1038/s41564-023-01575-9

Zuffa, Simone; Schmid, Robin; Bauermeister, Anelize; P. Gomes, Paulo Wender; Caraballo-Rodriguez, Andres M.; El Abiead, Yasin; Aron, Allegra T.; Gentry, Emily C.; Zemlin, Jasmine; Meehan, Michael J.; et al (February 2024, Nature Microbiology)

Abstract microbeMASST, a taxonomically informed mass spectrometry (MS) search tool, tackles limited microbial metabolite annotation in untargeted metabolomics experiments. Leveraging a curated database of >60,000 microbial monocultures, users can search known and unknown MS/MS spectra and link them to their respective microbial producers via MS/MS fragmentation patterns. Identification of microbe-derived metabolites and relative producers without a priori knowledge will vastly enhance the understanding of microorganisms’ role in ecology and human health.
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Untargeted mass spectrometry-based metabolomics approach unveils molecular changes in raw and processed foods and beverages

https://doi.org/10.1016/j.foodchem.2019.125290

Gauglitz, Julia M.; Aceves, Christine M.; Aksenov, Alexander A.; Aleti, Gajender; Almaliti, Jehad; Bouslimani, Amina; Brown, Elizabeth A.; Campeau, Anaamika; Caraballo-Rodríguez, Andrés Mauricio; Chaar, Rama; et al (January 2020, Food Chemistry)
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A community resource for paired genomic and metabolomic data mining

https://doi.org/10.1038/s41589-020-00724-z

Schorn, Michelle A.; Verhoeven, Stefan; Ridder, Lars; Huber, Florian; Acharya, Deepa D.; Aksenov, Alexander A.; Aleti, Gajender; Moghaddam, Jamshid Amiri; Aron, Allegra T.; Aziz, Saefuddin; et al (April 2021, Nature Chemical Biology)
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